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Add interactive ntSynt-viz output - #52

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lcoombe wants to merge 26 commits into
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interactive
Open

Add interactive ntSynt-viz output#52
lcoombe wants to merge 26 commits into
mainfrom
interactive

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@lcoombe

@lcoombe lcoombe commented Jul 31, 2026

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  • Main new feature: ntSynt-viz now outputs interactive HTML ribbon plots
    • Interactive features:
      • Hover/click on a chromosome to see the ID and length
      • Hover/click on a ribbon to outline the entire synteny block across all the genomes, and see the coordinates in each genome
      • Click on a chromosome in the colour legend to highlight all the synteny blocks mapping to that chromosome
  • New parameter: --optimize-ordering
    • if specified, will optimize the top-to-bottom ordering based on minimizing total pairwise inversions, while respecting the topology of the tree/cladogram
  • New output: *LLM-info.md
    • Markdown and ribbon plot image (PNG format) can be supplied to any LLM to generate a short summary of the output ribbon plot

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